rs260034394 SNP Detail

Summary

• ID
  rs260034394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67576075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGGGTT GGGTATCACA
  GTGTAGCTCA TGACTTTGTT CCCTCACCCC ACCCCCAATC CAAAAGGTTC AGAGTCCCCC
  GAGATGACAC TTCCTCCAGC ATAACCCCAG TTGGCTGACG TGAGCCTATT CCATCTGAGG
  CCATTCTCTC TTTGGTTCCT TTCTAATCTA TCCACACATG CCTTTCCCTT CTTTGATCCC
  Y
  TCCCTTCCAT TGTTCATTCA TGAAGAGTTT TGTTAGAGAC AAGCAATCTG TAATCCCTCA
  CCTGAAGACC GCAGACTGCA GCTCTGTCAT GCGAGGAAGC GCTCAAGTGT CCTGTGCGAA
  CCCCTCGCCT CTTCCTGAGA TAGACTTGGC TCTCCCTCTT GGATACTCTG CCCATTGAGT
  TCTCGGTGGT ACCAGCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383742619	MGP_WTSI_11_67498751	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260034394					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383742619	MGP_WTSI_11_67498751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67576075 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	275 bp downstream
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102274	transcription start site region 102274	1718 bp downstream
Tssr102275	transcription start site region 102275	1340 bp downstream
Tssr102276	transcription start site region 102276	1026 bp downstream
Tssr102277	transcription start site region 102277	614 bp downstream
Tssr102278	transcription start site region 102278	562 bp downstream
Tssr102279	transcription start site region 102279	185 bp downstream
Tssr102280	transcription start site region 102280	1395 bp upstream
Tssr102281	transcription start site region 102281	1883 bp upstream