rs260043821 SNP Detail

Summary

• ID
  rs260043821
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95241201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGATTAG ATGTAGTTAT GAAGTTTGAC
  ATCAAGGAAA TTAAATCGAG TTTCCTATTG CTCCCGTTTC CCCACTTGGA AAGAACTGTA
  GGCATAACTG TTCATCTTGT TCAGGTTACC CACTCTGGCC CAAGCCTTTT CACTATTAGG
  M
  ACACTCCTGA AACATGGAAA ACCTAGTTGG GACCTCTCAG AGCGTCCCAC AGCTACGCGT
  GCGCAATAGG CTCGAACCTC TGACGTCACT GAGCGCAGCC CGCCCCTACA TATTAGCAAC
  CGGAGGCGTC CGTAGCAGCA GTGGCTGCGG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848322	CHEV_1_97210053	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260043821					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95241201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	within coordinates
Fam174a	family with sequence similarity 174, member A	152 bp upstream
Rr29863	regulatory region 29863	within coordinates
Rr396183	regulatory region 396183	within coordinates
Tssr8214	transcription start site region 8214	131 bp upstream
Tssr8215	transcription start site region 8215	202 bp upstream
Tssr8216	transcription start site region 8216	611 bp upstream
Tssr8217	transcription start site region 8217	630 bp upstream
Tssr8218	transcription start site region 8218	648 bp upstream
Tssr8219	transcription start site region 8219	674 bp upstream
Tssr13058	transcription start site region 13058	579 bp downstream