rs260048518 SNP Detail

Summary

• ID
  rs260048518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101830347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGAGGGG GAGGAGAGTT
  GGGATGGGTG GGTAGGAAAT GCCTTGTAAT TAAATTTATC ACAGGTCTGC TCAGCTTGAA
  GCATGGACAC CTGTTTCCTT AGGACTGATG TGAGCAGAGA CAAAAACAGA TCCTTGGTCC
  TCCTTTCCTT TCTGCTGGGT GCCGACTGCT TGCTTTTGAA ATGGGCAAGT TCATGAAATC
  Y
  AGGAAAGTGG TGCTGGTCCT GGCCGGACGC AAAGCTGTCA TTGTGAAGAA CATTGATGAT
  GGCACCTCAG ACCGCCCTTA CAGCCATGCC CTGGTGGCTG GAATTGACCG CTATCCCCGA
  AAAGTGACAG CTGCCATGGC CAAGAAGAAA ATCGCCAAGC GATCCAAGAT CAAGTCCTTT
  GTGAAAGTTT ATAACTACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323834284	CHEV_11_101800835	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260048518					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101830347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3890	CpG island 3890	1860 bp distal
D11Mit332	DNA Segment, Chr 11, Massachusetts Institute of Technology 332	1275 bp proximal
Gm33662	predicted gene, 33662	1536 bp upstream
Gm74450	predicted gene, 74450	within coordinates
Rpl27-ps2	ribosomal protein L27, pseudogene 2	within coordinates
Rr457131	regulatory region 457131	1565 bp distal
Rr457132	regulatory region 457132	1446 bp distal