rs260058372 SNP Detail

Summary

• ID
  rs260058372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141935822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCTAAGA GGTTGTGGCA
  CACATCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAGGCA GAGCTCTGTG AGCTTGAGGC
  TAGCCTGATC TACAGAGTCA TTTCCAAGAC AGCCAGGGCT ACACAGAGAA ACCCTTCTGA
  AAAGCCAACA AGAAAGAAAG AAAAAAAAGA CTCTGCTTGC ACCTCAATCT AAAGCATCCT
  R
  CACAGTCCTC CTGAGCTAGT GCCAGTGTCC CCAACCCCAG CAGCTGAGCC AGTGTCCCCA
  ACCCTAGCAG CAGATTTGCT CATGGCTCAC TCACCAGGCC AGGCTGTGTC AGCAGTCGTT
  CAGGGTGGCA GTCCCCACTA GCTGACACTG CATGTCCCAC CTTTGACTCT TCCCCTCACT
  CTGCCAACCC TGAGAACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373450005	MGP_WTSI_7_149567990	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260058372					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373450005	MGP_WTSI_7_149567990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141935822 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	563 bp downstream
Rr658151	regulatory region 658151	522 bp distal
Tssr70137	transcription start site region 70137	1287 bp downstream
Tssr70138	transcription start site region 70138	1239 bp downstream
Tssr70139	transcription start site region 70139	1220 bp downstream
Tssr70140	transcription start site region 70140	1193 bp downstream
Tssr70141	transcription start site region 70141	1172 bp downstream
Tssr70142	transcription start site region 70142	1125 bp downstream
Tssr70143	transcription start site region 70143	539 bp upstream
Tssr70144	transcription start site region 70144	1341 bp upstream
Tssr75774	transcription start site region 75774	1276 bp upstream
Tssr75775	transcription start site region 75775	1271 bp upstream
Tssr75776	transcription start site region 75776	1250 bp upstream
Tssr75777	transcription start site region 75777	1199 bp upstream
Tssr75778	transcription start site region 75778	1186 bp upstream
Tssr75779	transcription start site region 75779	1151 bp upstream
Tssr75780	transcription start site region 75780	1135 bp upstream
Tssr75781	transcription start site region 75781	1117 bp upstream
Tssr75782	transcription start site region 75782	1089 bp upstream
Tssr75783	transcription start site region 75783	531 bp downstream
Tssr75784	transcription start site region 75784	1364 bp downstream
Tssr75785	transcription start site region 75785	1384 bp downstream
Tssr75786	transcription start site region 75786	1414 bp downstream