rs260062597 SNP Detail

Summary

• ID
  rs260062597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96318464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACATGGAT GCAGTAGTTT
  TTCTCCAGTT CCAGGTCCTG TTGGCTGTTA TGTTAATACA CTTCCCTGCA TGGTTCCCCC
  CTTCCTCAGC CACCCCCCCC CCTTTAAGAC AGGGTTTCTC TGTGTGGCCC TAGCTGTTCT
  AGAACTCACT CTATCAACCA GAGTAGGCCT AGAACTCAGA CATCAACCAG CCCCAGCCTC
  Y
  GGAGTGCTAG GATTAAAGGT GTGCACCCCG TCCCCAGGGC TTCTCTGCAT CCTATCCAGT
  AAATTCTTTA TGCTCTGCTT GCCTTTGTTC ACCAGGTTGG CTGGCCTGGT CCAACCCAAC
  AGAGGTTCTG GGGACTTGGA ATCTAGACCC TGAGGTATAT TCTAAGACGA CCTTTCTCTC
  TCTCCAAGGA AAGTCATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108967	CHEV_9_96336830	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260062597					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96318464 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	617 bp proximal
Cpgi22164	CpG island 22164	1092 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	1269 bp upstream
Rr368835	regulatory region 368835	1585 bp upstream
Rr684963	regulatory region 684963	779 bp proximal
Rr684964	regulatory region 684964	1280 bp proximal
Rr684965	regulatory region 684965	1406 bp proximal
Tssr90963	transcription start site region 90963	1750 bp downstream