rs260067260 SNP Detail

Summary

• ID
  rs260067260
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49685134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GCCAGGCACA GGGGACCTGC
  W
  AGGGGCGGCG ATTGTGGGGC TTTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323665823	CHEV_11_49607809	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260067260					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49685134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2800	CpG island 2800	within coordinates
Gfpt2	glutamine fructose-6-phosphate transaminase 2	within coordinates
Gm36507	predicted gene, 36507	within coordinates
Rr446281	regulatory region 446281	110 bp distal
Rr446282	regulatory region 446282	within coordinates
Tssr101196	transcription start site region 101196	123 bp downstream