rs260071642 SNP Detail

Summary

• ID
  rs260071642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5876766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAATAA AAACTCTGTG
  TGTGTGTGTG TGTGAGAGAG TGTGTGTGTG AGAATGTGTG TGTGTGTATG TGTGAGTGTG
  TGTGTGAGTA TGTGTGAGTG TGTGTGTATG TGTGTGAGTG AGTGTGTATG TGTGAGATGT
  AGGTAAGGCT GTAGAGGACG GGATGGTAAC TCAGCCACAG ATGCAGTGAT GACAGGAAAA
  Y
  GCCATTCAAA CCTTTCATTG CTCAAGGATA CAATCATGGA TTTATTCCCA GAACACTGGA
  GGGGTTGTTC CAATGTGACA AACATCTCTC ATCTGCGATA AAACGTCTAT AACCATTAGT
  GGCTGTGTGT GATGGCATAT GCCTGTCCTG TGAGCCCAGT ACTTCAGAGG CCAACACATG
  AAGATCATGA GTTCAAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401663122	MGP_WTSI_19_5826738	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260071642					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401663122	MGP_WTSI_19_5826738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5876766 () rs orientation: forward

Symbol	Name	Function Class
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr359206	regulatory region 359206	1635 bp proximal
Tssr157766	transcription start site region 157766	731 bp upstream
Tssr157767	transcription start site region 157767	within coordinates
Tssr157768	transcription start site region 157768	29 bp downstream
Tssr157769	transcription start site region 157769	91 bp downstream
Tssr157770	transcription start site region 157770	181 bp downstream
Tssr157771	transcription start site region 157771	221 bp downstream
Tssr157772	transcription start site region 157772	1427 bp downstream
Tssr157773	transcription start site region 157773	1558 bp downstream