rs260072072 SNP Detail

Summary

• ID
  rs260072072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89529779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGTTGTG TCCCTAAAGT GGATGGGCCC
  TGTGGAGATG TATGGTGTCC CTTGCTGAAA CAGGTCTCCT GTGGGGCAAG AGCTGACCTT
  TGGGCTTCTC AAAAGGAGCA TGAAGGCAGC CCTGACCCCT GAAGCTCATC CTCTGGCCTT
  Y
  CTGTGTGCTT CCTCTGCTAG CACAAGCTAC AGTTGAGGTA GTTGAGGTGT CCTCATGAAT
  CTTGGAGCCC ATGTGGGTAG CACAGTCCCT GCACCTTTAT TCTGTCCACT TGGCTATCAT
  TCATAACCCA CTGTCATGAT TAACGAGACT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319834382	CHEV_1_91498632	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260072072					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89529779 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	1167 bp upstream