rs260078423 SNP Detail

Summary

• ID
  rs260078423
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97745556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTACAT CCAGCAAGCT
  TTGCCAGCGT TCAACTCTAC TTTTGATTTG GGAGGGGTGG TTGTTATGCA TTGCTACTTG
  GTCTCTCTGA CTAATATGCA GGGAGAGGAG CTAGTAGAAA GAAGGGAGAT TCTTACAAAG
  AAAATATGGT AACTTGATAG GCATTTTAAG ATTATCCAAT GTAATTTATG AAATTCCTAG
  G
  CAAATGGATG GACCTGAAGG GTATCATCCT GAGTGAGGTA ACCCAATCAC AAAAGAACTC
  ACACAATATG TACTCACTGA TAAGTGGATA TTAGCCCAGA AACTTAGAAT ACCCAAGATA
  TAAGATACAA TTTGCAAAAC ACATGAAACT CAAGAAGAAC GAAGACCAAA GTGTGGACAC
  TTTGCCCCTT CTTAGAATTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323123520	CHEV_9_97763922	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260078423					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97745556 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	245 bp proximal
Rr205510	regulatory region 205510	205 bp proximal