rs260080577 SNP Detail

Summary

• ID
  rs260080577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26839096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGATCATGG CTAGAGGCTG AGCATTCAAC
  CTGTAATGAG ACTGTGCTCA AGACTCTGGT TCTCATTGGC CACCTCAGCA GCCTCATTCT
  TGATGTATAC AGAGTCATTG GGGGTTGCTG GGacatagag agcatgacat tctcatgcca
  Y
  cagcgcacct cctttacctg tttcagatcc cccagataac ttatgctacc ctgtgtacgt
  accgtgtgca tagttatggc accatattgt gtaaggagca aggaaagaag tctgtgtatg
  cccagtacag actcagtgtc tgcttctgag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325342564	CHEV_17_26757067	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260080577					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26839096 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	236 bp downstream
Rr523901	regulatory region 523901	1135 bp distal
Rr523902	regulatory region 523902	307 bp proximal
Rr523903	regulatory region 523903	837 bp proximal
Rr523904	regulatory region 523904	1338 bp proximal
Tssr143257	transcription start site region 143257	1390 bp upstream