rs260084579 SNP Detail

Summary

• ID
  rs260084579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTGAGGA GAGAACCTGG TATCTCAAGC
  AATCTGTCCC TAAGGAAGGG GAAAGTGCGA AAATGAGCCA ACACAGAACT TCTGACTTTG
  TGTTTGGATG GACTGCTTGG GTACAAAGTC TGCTGTTGAA CCTGACTTTA TGAAACAATT
  R
  ATGGCATCCT ATAGATTTGG TTTTGTTATG TAATACCAAC ACACATGTAT GTATTTAATT
  ATAGCCAAGA GGAAAATTGC TGTACTGAAA AAAAATATac atatacatac acacacacac
  acacacacac acacacacac acacacacac                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071218	CHEV_1_155031624	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260084579					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1276 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr28719	regulatory region 28719	360 bp proximal
Tssr14250	transcription start site region 14250	1517 bp downstream
Tssr14251	transcription start site region 14251	1577 bp downstream
Tssr14252	transcription start site region 14252	1608 bp downstream
Tssr14253	transcription start site region 14253	1631 bp downstream
Tssr14254	transcription start site region 14254	1648 bp downstream