rs260086499 SNP Detail

Summary

• ID
  rs260086499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178056830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGCGC GAGCTGGCCC
  TGGGACTGTG GTGAGCGGCC AGCCAGCCAG CTCTGGCCAC CTTTCTCCAG CAACCTGGAT
  CAGTGGCCAG ACCCAGAAAA GGTTGCTTCT GCGGGAAGCA TCTTGCCCAC ACCTCCCCAC
  CATGCTGTGC CTCCCCATTG GCCAGGAAGC CAGTTCCCTG GGGAGGTGCG GGGGGGGGGG
  R
  GGGGGGCGGG GGAAGATGCT GCTTCCCTTA GCTGGGCTTG CAGCCAGAGA GGAAGACTGG
  GAAAGGGGCT AATGCCCATG ATGGATTGTG CAGCTGCCCT CTGGCTCTTG AGGAGCGTTT
  TGTAGCCAGA ATCTCTTGAG CTTTAGTTTT GCTGCTATGC AAGCTGAAGC CATGTGCTCC
  ACCCCCTCTC TGCCTTACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	WSB/EiJ
ss356710487	MGP_WTSI_2_178149742	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	WSB/EiJ
rs260086499					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356710487	MGP_WTSI_2_178149742	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178056830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12875	CpG island 12875	within coordinates
Fam217b	family with sequence similarity 217, member B	within coordinates
Ppp1r3d	protein phosphatase 1, regulatory subunit 3D	574 bp upstream
Rr41407	regulatory region 41407	971 bp proximal
Rr56270	regulatory region 56270	within coordinates
Tssr796	transcription start site region 796	92 bp upstream
Tssr797	transcription start site region 797	1580 bp downstream
Tssr22178	transcription start site region 22178	446 bp downstream
Tssr28060	transcription start site region 28060	591 bp upstream
Tssr28061	transcription start site region 28061	530 bp upstream
Tssr28062	transcription start site region 28062	1567 bp downstream
Tssr28063	transcription start site region 28063	1592 bp downstream