rs260086820 SNP Detail

Summary

• ID
  rs260086820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164286407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCGCTC GCCAATGCTG
  TGGCCTGCAC CTGCATCGCT CTCTGGGAAC CTCGGAGACC TCAACTCCTT CGTACTGGTC
  TTACCCCTTC GTACTGGTCG GGGTTTACTG CAGGTCCACC TCCCCTAGGC CATGGCCAGG
  TGGGGGAAGG TCACTCCAGG ACGCTAGTGA CTCTGCCCAG CTCTGCTCCG CCTCTCTGCT
  Y
  ATGCACCTGC CGCCCCCTCG CACTCTCTGC CACTGCGGTT GCAGTTCCGG CCCGTCCCTC
  TTCTGCAGGC CAGCCCAGCG GGCAGCCTCG GTTCCTGACT CCTGGTCTGT GCTTGTGGGC
  GGCCTGAACC ACCTCAATCC GGACAATTGC CAAACCCACC CTGGGCTGTA GCTGGGAACC
  GGTTGTGGCT CCTGCCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352216963	MGP_WTSI_1_166388969	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260086820					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352216963	MGP_WTSI_1_166388969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164286407 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	483 bp upstream
Cpgi945	CpG island 945	within coordinates
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	773 bp downstream
Gm70492	predicted gene, 70492	92 bp upstream
Rr422212	regulatory region 422212	728 bp distal
Rr422213	regulatory region 422213	494 bp distal
Rr422214	regulatory region 422214	578 bp distal
Rr422215	regulatory region 422215	323 bp distal
Rr422216	regulatory region 422216	414 bp distal
Rr422217	regulatory region 422217	103 bp distal
Rr422218	regulatory region 422218	within coordinates
Rr422219	regulatory region 422219	1581 bp proximal
Tssr9788	transcription start site region 9788	308 bp downstream
Tssr9789	transcription start site region 9789	291 bp downstream
Tssr14746	transcription start site region 14746	826 bp upstream
Tssr14747	transcription start site region 14747	475 bp upstream
Tssr14748	transcription start site region 14748	101 bp upstream