rs260087399 SNP Detail

Summary

• ID
  rs260087399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11503202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACAACAA AAAATATATA
  TCAAAAGACA TCAAATTTTT TCCACCTGGT GTGACACTAC AAAAAAAAAA GCAAAACAGT
  ACAGGAGAAA ATATTTCTGA GTCACAGATA ACAAAAGGCA ATCATAGCTG CTGTGTATGT
  ATAGCATATA TGTGTATGTA CTGGAAACTT AACAATTGAA CGATAAAAAG ACAAACAGAA
  R
  TTGGAACATA GGCAATGATA TGAGACTACA CTTCTCCAGT GCCTATATAT GGGTGACCAA
  TCACACATGA GAAGATATTC AGTATCATTG ATTACTATGC AAATTAAAAA CACAAGGAAT
  CATTTGATAC ACAGGAGGAT AGCTACAGAC AGAAAGACAA ACAAGAACCA ATATTGATGA
  AAATGAGGAG ACATGAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324264582	CHEV_13_11580583	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260087399					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11503202 () rs orientation: forward

Symbol	Name	Function Class
D13Ertd463e	DNA segment, Chr 13, ERATO Doi 463, expressed	199 bp distal
Rr387978	regulatory region 387978	1469 bp upstream