rs260095255 SNP Detail

Summary

• ID
  rs260095255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132461416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCATTTT CCTGGTGAAG
  ACATGGAGGC CTTAAAGAGG TCGTTATGGT TTGAATCTGA AGTGCCCCCC CGCCCCCCCT
  CCCTTCATTT TGAATGTTTG TTTCCCAACC ACTGTAGCAT TTTTAGGTAG TGGATTCCAG
  CTGGCAAAAG GAAACCTTTG AACCTGGTTC TGGATCCTGC CCAGTGGCGA TATGAGGGGC
  Y
  CCTGATACAT TGCCACAGTG CTTCGGCACC ATTAACTGCC AGGCCTTCAC AGGTTGGTAT
  AGCAATCACA GCATTGCAAA AGTAATGTTG CCTTCTCGGG GTCTGCGAGC TTTCAGGGGC
  AGGGCGGGAT TAGGACGCAG AATGTTCACC TCACTACGGG TATGAGTTTC CTGTTCTGCC
  AAACTGGTAG GCACCACGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321335987	CHEV_4_132290020	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260095255					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132461416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1472 bp distal
Cpgi14970	CpG island 14970	319 bp distal
Gm69628	predicted gene, 69628	875 bp upstream
Rr398540	regulatory region 398540	1248 bp downstream
Rr601049	regulatory region 601049	1650 bp distal
Rr601050	regulatory region 601050	1565 bp distal
Rr601051	regulatory region 601051	1158 bp distal
Rr601052	regulatory region 601052	1767 bp proximal
Rr601053	regulatory region 601053	1853 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr43696	transcription start site region 43696	1667 bp upstream
Tssr43697	transcription start site region 43697	1547 bp upstream
Tssr43698	transcription start site region 43698	1519 bp upstream
Tssr43699	transcription start site region 43699	720 bp downstream
Tssr43700	transcription start site region 43700	732 bp downstream
Xkr8	X-linked Kx blood group related 8	1559 bp upstream