rs260101041 SNP Detail

Summary

• ID
  rs260101041
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74560038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGGTGGA TGAAAGAAGG
  GGGTTGGGGA AGAAACAAAT GGTCTAATAT TTTCTTCTGG GGAAAGAAAA CCAAACCTGT
  ATGCCCTGGG CCATCAGATA ATGTCTGAAT TTCCTACTTC AACTAGATTC CAAATGCTCC
  AACTATCCCC AAAAGCAGCC TTTTATAGGA TTCTGTGTAT GGCCAGTGTG TGTGTGTGTG
  K
  GGGGGGGGGG GTGCTGTGCA GTAGGGAGAG AGTGTGTAGG TAAGGAAGTC TTATTTTTAA
  AAAGAAACTA ATAGACTCTA GAAGCCCACA GAAGTTGATC TTAAAGGGAT TTCCCTTGAA
  GTCTTTTTTT TTTTTTGAAG AGACATTAAT TAGAAGCAGA AATTGTAAGC TCTGAAAGTT
  TTCAGGCCTA CTTCAATACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	CAST/EiJ	CBA/J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485348	MGP_WTSI_2_74567751	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	G	T	G	G	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	CAST/EiJ	CBA/J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260101041					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	G	T	G	G	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485348	MGP_WTSI_2_74567751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74560038 () rs orientation: forward

Symbol	Name	Function Class
AI448005	expressed sequence AI448005	1642 bp proximal
Cpgi11806	CpG island 11806	1856 bp distal
Gm28230	predicted gene 28230	within coordinates
Hoxd3	homeobox D3	within coordinates
Hoxd4	homeobox D4	534 bp downstream
Igs15	intergenic site 15	within coordinates
Rr57048	regulatory region 57048	within coordinates
Rr57049	regulatory region 57049	362 bp proximal
Rr373366	regulatory region 373366	899 bp upstream
Tssr18441	transcription start site region 18441	135 bp upstream