rs260102172 SNP Detail

Summary

• ID
  rs260102172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95240524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCAGCTGT GATTTTAGAG GTCCTCTATA
  GCTACTGCAG TGTCTTCAGG GTAATCCTAA TAGTTTCCAG GACATGGACT AAATTGCAGT
  TCCAGACCCT TAAACAGCTG ACTCTTGACA GATGTCTGAG AAAGCCTTTT AAAAAATCTG
  Y
  TTATAATAGA CTGAAAGAAA GCTCAAGAAA GAACTAATCA TATTTATACA CAACCCATGC
  TCCAATGCCC CAGGCAGGTG TCTGGTTTTT CTCAGTGTTA CTTGATGGAA ATCTTAGATA
  AAGGCAACAT TATTCAAATG TAAGAGAACT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848305	CHEV_1_97209376	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260102172					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95240524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	629 bp proximal
Fam174a	family with sequence similarity 174, member A	829 bp upstream
Rr396183	regulatory region 396183	562 bp upstream
Tssr8214	transcription start site region 8214	808 bp upstream
Tssr8215	transcription start site region 8215	879 bp upstream
Tssr8216	transcription start site region 8216	1288 bp upstream
Tssr8217	transcription start site region 8217	1307 bp upstream
Tssr8218	transcription start site region 8218	1325 bp upstream
Tssr8219	transcription start site region 8219	1351 bp upstream
Tssr13058	transcription start site region 13058	1256 bp downstream