rs260104413 SNP Detail

Summary

• ID
  rs260104413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTATAC CCTTGAAGTC
  TATATTATGG TTACAATTCA TATTCTGTGA AGCACATATC TTGTTTTTTT AAACATTATT
  CTTTTTGCTT TAATAAGGAA ATAAATAATT TTTTAGCTGT AACATTTTAA TGGCTATGAC
  AATATTTTAA GTAAAGAAGT CTAAGGAACT CAGTGTGGGG AGGGAGGGGG AGTTGGAGAG
  R
  GGCAGAGCCT TCCTTTCAGT GAGGAAAGCC CTGATGAGGA AAATGAAGCA ACAGATGTTT
  CTTCTGTTAC AATTGAAGTT GTTTCATTCA AAATTCAACA GTAGCTGAAA TGAGGAGAGA
  GAGGGGGGTC ATAAATCCGA CCTAAATGGT GAATAAATAA AACAGCCATT TATCATTTAT
  TTAAAATTCA TCCTTTATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107367	CHEV_9_96160751	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260104413					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142385 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1098 bp downstream
Tssr86589	transcription start site region 86589	1621 bp downstream
Tssr86590	transcription start site region 86590	1606 bp downstream
Tssr86591	transcription start site region 86591	1547 bp downstream
Tssr86592	transcription start site region 86592	1530 bp downstream
Tssr86593	transcription start site region 86593	1502 bp downstream
Tssr86594	transcription start site region 86594	1319 bp downstream
Tssr86595	transcription start site region 86595	1071 bp downstream
Tssr86596	transcription start site region 86596	1055 bp downstream