rs260114841 SNP Detail

Summary

• ID
  rs260114841
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46121478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tatttattt tttaaagata tatattaaag
  atacatatat cttaaatata ttaatactta agatgtttaa tatatattaa atatatttaa
  aaataaGGTA CTAACCtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgag
  W
  gagagagaga gagagagaga gagagagaga gagagagaga gaggagggtc ctcttatcac
  tttctgatta ttcctttgag acaaggtctc tacctaaact taaagggtca tattttctag
  actaggctgg aaatcagcac acctagtctt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324332931	CHEV_13_46063371	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260114841					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46121478 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	1494 bp downstream
Cpgi5536	CpG island 5536	1699 bp distal
Gm56575	predicted gene, 56575	1706 bp upstream
Rr478836	regulatory region 478836	1717 bp distal
Rr478837	regulatory region 478837	1760 bp distal
Rr478838	regulatory region 478838	1216 bp distal
Rr478839	regulatory region 478839	1230 bp distal
Rr478840	regulatory region 478840	1195 bp proximal
Tssr122341	transcription start site region 122341	1677 bp upstream