rs260117072 SNP Detail

Summary

• ID
  rs260117072
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46608516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCAGAC GCCGCGCCCC
  GTCAGTCAGG TATCGACTAG ACCCGGAGAC CAGATCTCAG AGCCCCGCCC CGTCCCACCC
  CGCCCTTTCC AGTCCGAGGA CTCCCGCGGG TTCTGCATCT ACCTTTACCC TAAACTAGAG
  ACTGACAGCC GCCCAGGGCT CCGGGGACTG GAGCGCCCTG CGAGGTGGAA AAATACCGCC
  C
  GCTTGCTGGG GGTGGGTGGG GTGGGGGTGG GAATTTAGCT AGGAAGAACC AAAGAACGAA
  CAGATGCAAG CGACATGCGA GTTTCCTGGG AGACTAGAAT TCAGCACAAA ATTGGGGGGT
  GGGGGAGAAT TATCAAAGTC AAAAAGTGTA GCCGAATTTT AATGTTCAAA ATCAAGGTTT
  TGCCGGGTGA TGGTGACGCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371217135	MGP_WTSI_7_54214138	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260117072					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371217135	MGP_WTSI_7_54214138	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46608516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19131	CpG island 19131	91 bp distal
Gm39012	predicted gene, 39012	within coordinates
Rr646810	regulatory region 646810	863 bp distal
Rr646811	regulatory region 646811	252 bp distal
Rr646812	regulatory region 646812	219 bp distal
Rr646813	regulatory region 646813	208 bp distal
Rr646814	regulatory region 646814	within coordinates
Tssr72574	transcription start site region 72574	294 bp upstream
Tssr72575	transcription start site region 72575	288 bp upstream
Uevld	UEV and lactate/malate dehyrogenase domains	241 bp upstream