rs260118123 SNP Detail

Summary

• ID
  rs260118123
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59839992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAACAAAC AAACATTCTT AAAAGTGGag
  agatggcgca cacctttaat cccagcactt gggaggcaga ggcaggcgga tttctgagtt
  cgaggccagc ctggtttaca gagtgagttc caggacagcc agggctatcc agagaaaccc
  W
  gtctccaaac aaacaaGTGG AGAGGGGAGA AGTGATGCTA GGAAACATTT GAAACGAAGA
  CACAGAAGTT GCTCTGAATG ATTGTGTCCC ACTATTAACT TTATTCTAAT AATTCTAATA
  GAATATACAA GGATGTATGG TCTTTTAGGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323699688	CHEV_11_59762668	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260118123					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59839992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	486 bp distal
Med9	mediator complex subunit 9	within coordinates
Med9os	mediator complex subunit 9, opposite strand	1019 bp upstream
Rr448290	regulatory region 448290	1032 bp distal
Rr448291	regulatory region 448291	452 bp distal
Tssr101871	transcription start site region 101871	905 bp downstream
Tssr108257	transcription start site region 108257	1065 bp upstream
Tssr108258	transcription start site region 108258	1003 bp upstream
Tssr108259	transcription start site region 108259	985 bp upstream