rs260123205 SNP Detail

Summary

• ID
  rs260123205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48045346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGAACG CTGAGAGTGG
  CCAGCCCCTC TGGATCCTCG GGGATGTCTT CCTCAGGTCT TACTATGCTG TCTTCGACAT
  GGGCAATAAC AGGGTGGGCC TTGCCCCTTC TGTCTAGACT TGACATCTAG ACAAACCCCC
  CCCCCACCCC CGTGCCCTTC CTTCTTCCCC TCAGCCTGTC CCATCTGCCC CGCCTCTCTG
  Y
  ATCCAGCTTT CCTTTTCTGG AAACCTAGAC ATTCCCTAAT AATAAATAGT CCTCCATATT
  GACCAGCCTG TTGAGTCATT TGTATGTAGG GGGTGAGTAT TGGGGGAGCT GGGCAAAGCT
  GTGCCATGTC AGATTCCTTG GGTCTCGGGG AACTGTCAGA GTGGGAGACA GGGCAAGTTC
  CGCTTTGATT GACCTTAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353051	MGP_WTSI_17_47871370	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260123205					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353051	MGP_WTSI_17_47871370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48045346 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr145028	transcription start site region 145028	1968 bp downstream
Tssr145029	transcription start site region 145029	1951 bp downstream
Tssr145030	transcription start site region 145030	1456 bp downstream
Tssr145031	transcription start site region 145031	1448 bp downstream
Tssr145032	transcription start site region 145032	1363 bp downstream
Tssr145033	transcription start site region 145033	1361 bp downstream
Tssr145034	transcription start site region 145034	1350 bp downstream
Tssr145035	transcription start site region 145035	666 bp downstream
Tssr145036	transcription start site region 145036	637 bp downstream
Tssr145037	transcription start site region 145037	610 bp downstream
Tssr145038	transcription start site region 145038	591 bp downstream
Tssr145039	transcription start site region 145039	220 bp downstream
Tssr145040	transcription start site region 145040	186 bp downstream
Tssr145041	transcription start site region 145041	174 bp downstream
Tssr145042	transcription start site region 145042	123 bp downstream
Tssr145043	transcription start site region 145043	97 bp downstream
Tssr145044	transcription start site region 145044	84 bp downstream
Tssr145045	transcription start site region 145045	67 bp downstream
Tssr145046	transcription start site region 145046	16 bp downstream
Tssr145047	transcription start site region 145047	within coordinates
Tssr145048	transcription start site region 145048	17 bp upstream
Tssr148470	transcription start site region 148470	1983 bp upstream
Tssr148471	transcription start site region 148471	1961 bp upstream
Tssr148472	transcription start site region 148472	1947 bp upstream
Tssr148473	transcription start site region 148473	1933 bp upstream
Tssr148474	transcription start site region 148474	1915 bp upstream
Tssr148475	transcription start site region 148475	1371 bp upstream
Tssr148476	transcription start site region 148476	1344 bp upstream
Tssr148477	transcription start site region 148477	1311 bp upstream
Tssr148478	transcription start site region 148478	611 bp upstream
Tssr148479	transcription start site region 148479	559 bp upstream
Tssr148480	transcription start site region 148480	93 bp upstream
Tssr148481	transcription start site region 148481	57 bp upstream
Tssr148482	transcription start site region 148482	54 bp downstream