rs260131049 SNP Detail

Summary

• ID
  rs260131049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGGACTC TTCACTTTGA
  GGGTTGAGTG TGGTAGGCAG AGGTCCATCC TGATTCTTAT TCACCTATGT TATTATTATT
  AGGCGATTTA AAACTCGAAG CTTCCCTCAA CGTCCAAACT GCAAGGGCAG AGGGAAGGCG
  GGGCTTGGGG ACCTTCCTGG TCTCTCTTCT GCGCCTGCAG CGTGGAGCCT CAGGCTGTAC
  Y
  CTCTTAGCTA GGGTCAATTT TTCTCAGGGT GCCTTTTCCC ACCCAGTGAG GATGGGGGCT
  CGTTTCTCGA GTCAGATGAG CATTCTTCGG GTAAAGAGGA CGAAATAACC CGCCGAGCCA
  ACCTGCGAGC CTGTTTTCTT TGAATAATTG CCTGGCCGAT GCGAAATGCC CTTGGGGGAA
  ATATTTATTA AATGGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137460	CHEV_9_99777552	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260131049					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	663 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	409 bp downstream
Rr685463	regulatory region 685463	1405 bp distal
Rr685464	regulatory region 685464	974 bp distal
Rr685465	regulatory region 685465	473 bp distal
Rr685466	regulatory region 685466	650 bp proximal
Sox14	SRY (sex determining region Y)-box 14	963 bp upstream
Tssr91083	transcription start site region 91083	940 bp upstream
Tssr91084	transcription start site region 91084	921 bp upstream