rs260139465 SNP Detail

Summary

• ID
  rs260139465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129325909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTTACT ATTTCCCAAT
  TGTTTACTCG CCAAGCTTTC AGGTCCACGC GCCTCAGGGC TGCGCCTCTC ACTCTGAAAC
  TTCATTCAAA GGCCAGGCAG GGAGGCCCAA GAGGTGGCGA ATGGGCTTGA GTATGACCTC
  AAGGCCACTT CCTCCCTCTT GGCGCCCTTC CCTCCCCTCC CCCAGTCCAC CAACCACCTT
  Y
  TTGTAAACAA AACTATCCCC CAGGGCGATG GGAGGTCTTG CTCTTCTGCG CCCTCTCGCG
  CAAAGGGTTA ATTTTCCCGA TCGCACGAGG GGGAGGAGAT TTCCCTGTAG ACGAGTAAAA
  AGCGTGATGG ACAAACGTGC GGGCACTAAG ACCGCAAGGC ATTCATTTCC TCCTACGGTG
  GATGCGGACG CTGGGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359689123	MGP_WTSI_3_129235178	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260139465					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359689123	MGP_WTSI_3_129235178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129325909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13814	CpG island 13814	within coordinates
Elovl6	ELOVL fatty acid elongase 6	126 bp upstream
Gm35986	predicted gene, 35986	within coordinates
Rr375731	regulatory region 375731	1994 bp downstream
Rr585018	regulatory region 585018	within coordinates
Rr585019	regulatory region 585019	77 bp distal
Rr585020	regulatory region 585020	45 bp proximal
Rr585021	regulatory region 585021	65 bp proximal
Rr585022	regulatory region 585022	137 bp proximal
Tssr31642	transcription start site region 31642	137 bp upstream
Tssr31643	transcription start site region 31643	193 bp upstream
Tssr31644	transcription start site region 31644	376 bp upstream
Tssr31645	transcription start site region 31645	1393 bp upstream
Tssr35616	transcription start site region 35616	261 bp upstream