rs260143175 SNP Detail

Summary

• ID
  rs260143175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19297820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGAAAG ATTTCTAGTG
  ACAAGGGGCT GAAACAGGGG ACACAGACTC CCTCACTAGA CGGCTAGAGC AAACTGAGGA
  AGGGTAAAAC TTCAACGCTA ACCACCAACC TGCAGCATTT GCTCCCGGGC ACTGGCACGG
  CACTGGCACA CAAGTGTGAC CACCACCACC ACTCCCAGTC CCCTCCGTGG GAAGACAAAC
  Y
  TGCAGGTGAC TGCAGTGGAC CACATCACCA AGAGGGAACC TTGAAACCTA GTGTAAGCCA
  AGGCCCTGTC TAGGCCTTTT CTAGTAAAAA GCCATCCTTG CCCACCTCGG GTCAATTTCT
  TATGCAGAGA TGAATGTCAG CCATTTGGGG AGGATGCCAG GAGCAGTGCA AGCCCTATAC
  TTTTATCTGG ACGCCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370752038	MGP_WTSI_7_20149244	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260143175					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370752038	MGP_WTSI_7_20149244	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19297820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	1086 bp distal
Gemin7	gem nuclear organelle associated protein 7	1054 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	819 bp upstream
Rr643188	regulatory region 643188	1388 bp distal
Rr643189	regulatory region 643189	329 bp distal
Rr643190	regulatory region 643190	672 bp proximal
Rr643191	regulatory region 643191	756 bp proximal
Tssr70928	transcription start site region 70928	1729 bp upstream
Tssr70929	transcription start site region 70929	1698 bp upstream
Tssr70930	transcription start site region 70930	1647 bp upstream
Tssr70931	transcription start site region 70931	1494 bp upstream
Tssr70932	transcription start site region 70932	1458 bp upstream