rs260153914 SNP Detail

Summary

• ID
  rs260153914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACTCAGA GACCAGCAGT
  GGGAACTGGG ACTCCTGGGA CTGCAGTTAC AAGAGATTTT GAGACACCAT GTGGGTGCGG
  GTGCGGGTGC GGGTGCTAGG AATCAAATGT AGGTCCTCTG GAAGAGCAGC CAGTGCTCTT
  AACCACCGAA CCATCTGTTC ACTCTTCTTT TATCTTTTAA ATTTTACATT TAAAAAATTA
  Y
  TTTGTGATCT TGTGTGTGTG TTAGTGTACA CATACGAAAG CATACGTGTG GGTATCAGAG
  GATAACTTAG GAAAATTGAG TCTCTCCTTC TAGCTCCAAG AGCTTAAATT CAGGTCTTCA
  AGCTTGGCAG CAACTTTATC AGATAAATCA TGTCACTGAG TTCTTTTGTC TTGGTATATA
  AATCATGTTA GCCTGGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291486	CHEV_13_23850923	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260153914					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943037 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1416 bp upstream
Cpgi5375	CpG island 5375	1557 bp distal
Cpgi5376	CpG island 5376	1625 bp proximal
H4c1	H4 clustered histone 1	1741 bp downstream
H4c2	H4 clustered histone 2	1645 bp downstream
Rr388131	regulatory region 388131	1196 bp downstream
Rr388132	regulatory region 388132	742 bp upstream
Rr475944	regulatory region 475944	926 bp distal
Tssr121748	transcription start site region 121748	1425 bp upstream