rs260158119 SNP Detail

Summary

• ID
  rs260158119
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128768164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCACTGA GAAATAGTCT
  GAGAAAGATC TCTAGAGTGA CATGCTCAAG GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTAA AAATAGAACT TCAGGCAAAG CAGTCAGAGA GGGGTGCATG CAAGACCAAT
  GCCTAGTAAG AGAAGCCAGT GGGGCTGTAG AGATGGCTCA GAGGTTAAGA GCACTGACTG
  C
  TTTTCCAGAG GTCCTGAGTT CAATTTCCAG CAACCACATG GTGGTTCAAA ACCATCTGTA
  ATGGGATCTG ATGCCCTCTT CTGGTGTGTC TGAAGACAGC TACAGTGTAC TCAGACATAA
  AACAAATAAA TAATTCCTGG AAAAAAAAAA AAAGAAAGAG AAGCTAGAAG ACAAAGTGGA
  AGGGGGTGAG GCTACTATTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536797	CHEV_10_128369351	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260158119					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128768164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	1456 bp proximal
Itga7	integrin alpha 7	1481 bp upstream
Rr441372	regulatory region 441372	1929 bp distal
Rr441373	regulatory region 441373	488 bp distal
Rr441374	regulatory region 441374	1030 bp proximal
Tssr96480	transcription start site region 96480	1456 bp upstream
Tssr96481	transcription start site region 96481	1481 bp upstream
Tssr96482	transcription start site region 96482	1487 bp upstream