rs260161192 SNP Detail

Summary

• ID
  rs260161192
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11337135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCTCAG GTCATGTGAT
  CAAGGACTCT CAGTAGACAG GTCTTTGTGG AGCTCTTTGC CCTCCTGAGC TCAGTCTCTT
  CATCAATGAA AGGATCGTAT TGATTGTATT CACTGGGTAA ACACTCAGGT CACACAAACA
  GACCAGTGCA AACCTCCCTG AAACCAGCAA AGAACACTAC AGATGACAGT GCAAATACTG
  W
  TGCTGACAGA GAGTTTGGGG TCATGGTCTG CTCAGTTCTC TTACAATTCC CCAGGAAGAG
  CCACAGATAG TAGGTTCTAG AAAGGAGAGA GCTGATGAGC AATGCTTTCA GCACCTAAGA
  AGATGTTCGC CAACCAGGAG ATAGTTGTTG CTGAGTTTCT TAAATGCTCC CGTGCAGAAG
  ACCCATAAAC TTACCAACTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353092502	MGP_WTSI_2_11253951	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	A	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260161192					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	A	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353092502	MGP_WTSI_2_11253951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11337135 () rs orientation: forward

Symbol	Name	Function Class
Gm37851	predicted gene, 37851	501 bp upstream
Gm38171	predicted gene, 38171	within coordinates
Gm75637	predicted gene, 75637	435 bp upstream
Rr396766	regulatory region 396766	546 bp downstream
Rr551766	regulatory region 551766	within coordinates
Rr551767	regulatory region 551767	629 bp distal
Rr551768	regulatory region 551768	304 bp proximal
Rr551769	regulatory region 551769	446 bp proximal
Tssr404	transcription start site region 404	269 bp downstream
Tssr405	transcription start site region 405	464 bp upstream
Tssr406	transcription start site region 406	487 bp upstream
Tssr22607	transcription start site region 22607	227 bp downstream
Tssr22608	transcription start site region 22608	247 bp downstream
Tssr22609	transcription start site region 22609	1051 bp downstream