rs260179082 SNP Detail

Summary

• ID
  rs260179082
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31051213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCACTCT TAACCACTGA
  GCCATCTCGC CAGCCCCCCA GGGCATTCTT TTCTGCCTCC AGGGGAATAC ATGTATGCAA
  ATAGATAGAC AGACACAGTA AATAATAGAA ATAAACCTTA AAAAGTCTGT TAAAAGCCGG
  GCGTGGTGGC GCACACCTTT ATTCCCAGTA CTGGGGGCGG GGGTGGGGGG GGGTGGGGGG
  K
  GGTGGCAGAG GCAGGTGGAT TTCTGAGTTC TAGGCCAGCC TGGTTTACAA AGTGAGTTCC
  AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTCGAACC CCCCTCCCCC CCCCAAAAAA
  GAAATGGCTG TATGCTCCTG GTGTGTGTGT GGGTGTGTGT GAAAAAGAAA TGGCTGTATG
  CTCCTGGTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	PWK/PhJ	QSi5/Ianm
ss353531891	MGP_WTSI_2_31016721	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	PWK/PhJ	QSi5/Ianm
rs260179082					SNP	T	G	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353531891	MGP_WTSI_2_31016721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31051213 () rs orientation: forward

Symbol	Name	Function Class
Gpr107	G protein-coupled receptor 107	within coordinates
Rr372995	regulatory region 372995	360 bp upstream
Rr554554	regulatory region 554554	253 bp distal