rs260191674 SNP Detail

Summary

• ID
  rs260191674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7867322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTTTGT GATTTGTAGT
  AGTTATTAGT AAATAAATCA TAAACACTGA TTGGTTTTTG ATCAACAATG TTAAGACCTA
  TAAGCTTCTA GTTTTGTTAT CACCAACTGG CAAATATGTA AATTTGTTTG AATATTTTAT
  TTTATTTATT TTTGTCTTTT CAAGACAGAG TTTCTCTGTG TAGTCCTGGC TGTCCTGAAA
  Y
  TCACTCTGTA GACCAGGATG GCCTGGAACT CAGAAATTTG CCTGCCTCTG CCTCCCAAGT
  GCTGGGATTA AAGGTGTGGG CCACCACTGC TAGGCTGAAG ATGTGTTCTT GAAAATAATA
  TAAACATTTA CAGGGTACTT GTGGTCAAAA GCACTAATGG TATGCCTGAA TAAAACTAAT
  CTAGTCCAGT TTTTTTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325523062	CHEV_18_7867320	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260191674					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7867322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	1114 bp proximal
Gm9993	predicted gene 9993	696 bp downstream
Rr405554	regulatory region 405554	1645 bp upstream
Tssr149978	transcription start site region 149978	1151 bp upstream
Tssr149979	transcription start site region 149979	1501 bp upstream
Tssr149980	transcription start site region 149980	1555 bp upstream
Tssr149981	transcription start site region 149981	1817 bp upstream
Tssr149982	transcription start site region 149982	1837 bp upstream
Tssr149983	transcription start site region 149983	1892 bp upstream
Tssr149984	transcription start site region 149984	1985 bp upstream
Tssr152379	transcription start site region 152379	1739 bp downstream
Wac	WW domain containing adaptor with coiled-coil	1510 bp upstream