rs260192312 SNP Detail

Summary

• ID
  rs260192312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAAAATT GAATTTTTAA
  AAGCAAAATA ACGTTTAGTA CTAGCCCTAC AGCCAAAGCT GACCAAGTAT TTACTCTTAA
  TTTTTCTCAA TTGTTTATTT CAATTTATTT CAGAATGTTC ATGAAGATAC GCACACTGAA
  TTTTAGAGAA AGTTAAGGAA TTTTCAGTAT TAAAAAAAAC AACATTATTT CATGTATAGA
  Y
  TTTTAAATTA AATTCCAGTG TGATTCTTTG ATGGAGACCA GCTAGTTGGG AGGCTAAGGC
  AGGAGAATTC CTGGGATCAG ATGTTCAAGA CCAATATGAG CAATTCAGCA AGATCCCCAT
  CTCAAAAACA GAAAGTTGTC TTTCAAGGGA AATAGTACTC TAACTTTCAA AGCGTAATCA
  CAGAACACAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895796	CHEV_3_116296604	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260192312					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	790 bp proximal
Rr397965	regulatory region 397965	1077 bp upstream
Rr583746	regulatory region 583746	764 bp proximal
Rr583747	regulatory region 583747	1061 bp proximal
Rr583748	regulatory region 583748	1142 bp proximal
Rr583749	regulatory region 583749	1335 bp proximal
Rr583750	regulatory region 583750	1503 bp proximal
Sass6	SAS-6 centriolar assembly protein	1296 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1273 bp upstream
Tssr35316	transcription start site region 35316	1130 bp downstream
Tssr35317	transcription start site region 35317	1162 bp downstream