rs260195663 SNP Detail

Summary

• ID
  rs260195663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108903757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATCAAAT GTTGTTACAG
  AGAAATTCTG CAGATCCACC CCGGAGACTG GATCAGAGTC CTTTTATATA ATGTCATCAC
  AGGGGGACTG TAGACAGGTC CTGTAAAAAT GTTTAAAAAT TTGTTCCCTA GAGTAGGTTT
  AAGATTACTT TGTTCTTATT TTATTATCTC CATTGGCTTA GCTCATTCTT TCTTCCTGAA
  Y
  AAGGTATTTC AGCACAGTTC CTCTTGACTT CAGGGTGAAT TCTAGACCAG ATTTGAAGCC
  CACACAACTT GGCTGCTAAA AGCCCCTTGG AGCCCCTGAG ACTCGTAACT CAGGGTTCCT
  AGCATGTTCA GCAACCTTGC AAGTTCCCTA TTACTCAGAA CCTCCCAGCC ATGTCTGGCT
  CTCAGCCTTG GAGATCACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384649032	MGP_WTSI_11_108874245	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260195663					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384649032	MGP_WTSI_11_108874245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108903757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	615 bp distal
Gm36876	predicted gene, 36876	within coordinates
Rr458739	regulatory region 458739	1610 bp proximal
Tssr105627	transcription start site region 105627	1176 bp downstream
Tssr105628	transcription start site region 105628	1105 bp downstream
Tssr105629	transcription start site region 105629	1072 bp downstream
Tssr105630	transcription start site region 105630	1025 bp downstream
Tssr105631	transcription start site region 105631	937 bp downstream
Tssr111515	transcription start site region 111515	1199 bp upstream
Tssr111516	transcription start site region 111516	1149 bp upstream
Tssr111517	transcription start site region 111517	1078 bp upstream
Tssr111518	transcription start site region 111518	1060 bp upstream
Tssr111519	transcription start site region 111519	1049 bp upstream
Tssr111520	transcription start site region 111520	991 bp upstream
Tssr111521	transcription start site region 111521	931 bp upstream