rs260196788 SNP Detail

Summary

• ID
  rs260196788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62494897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACGGATG GTTGTGAGCC
  ACCATGTGGT TGCTGGGATT TGAACTCCGG ACCTTCCGAA GAGCAGTCGG TGCTCTTAAC
  CACAGAGCCA TCTCCAGCCC CCTATAGAGC CATTTTTGTG TGTGTTTGCT GTCTTGATGC
  TAGAAAAAAA TGGCACCGGA CTTAGGTGGT TGTGAGCCAC AATTAGTGCT GGCAGTCAAA
  Y
  CTGGTCTTCT AAGAACTTAG ACCTTCTAGT CCATTAACTT GGGTCTTAAA ATTTTCAGTT
  AATGTGGTCT TACAATTGAA CCCAGTTGGG CTGGTTTGGC TAGTTGTAAA TGTATTTTAG
  TAATTTGAAA AATACTTCCC TTTTAGGTCT AGGATGTGTT AAGAACTGTA GCTTTCTTGA
  GAAGAGGCAG GCAGAGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383610560	MGP_WTSI_11_62417573	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260196788					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383610560	MGP_WTSI_11_62417573	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62494897 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	within coordinates
Cpgi3027	CpG island 3027	568 bp distal
Lrrc75a	leucine rich repeat containing 75A	813 bp downstream
Lrrc75aos2	leucine rich repeat containing 75A, opposite strand 2	1659 bp upstream
Rr246930	regulatory region 246930	within coordinates
Rr402627	regulatory region 402627	1183 bp downstream
Snord49a	small nucleolar RNA, C/D box 49A	550 bp downstream
Snord49b	small nucleolar RNA, C/D box 49B	923 bp downstream
Snord65	small nucleolar RNA, C/D box 65	459 bp upstream
Tssr102048	transcription start site region 102048	1185 bp downstream
Tssr102049	transcription start site region 102049	1080 bp downstream
Tssr102050	transcription start site region 102050	993 bp downstream
Tssr102051	transcription start site region 102051	905 bp downstream
Tssr102052	transcription start site region 102052	879 bp downstream
Tssr102053	transcription start site region 102053	614 bp downstream
Tssr102054	transcription start site region 102054	1657 bp upstream