rs260212867 SNP Detail

Summary

• ID
  rs260212867
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143802676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA CTACGATGGG TGATTTTTTT
  T
  AAAGATAGTT ATTTTATATA TATAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321708584	CHEV_5_144577790	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260212867					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143802676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16998	CpG island 16998	543 bp proximal
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	910 bp upstream
Rr399488	regulatory region 399488	168 bp upstream
Rr399489	regulatory region 399489	637 bp upstream
Rr624298	regulatory region 624298	267 bp proximal
Rr624299	regulatory region 624299	377 bp proximal
Rr624300	regulatory region 624300	878 bp proximal
Rr624301	regulatory region 624301	1217 bp proximal
Tssr49676	transcription start site region 49676	865 bp upstream
Tssr49677	transcription start site region 49677	898 bp upstream
Tssr49678	transcription start site region 49678	928 bp upstream