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rs260213855 SNP Detail
Summary
  • ID
    rs260213855
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr16:22713326 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCCATGCTT TGGACCCCAC
CCCGCTGGCA AACTGTTCTG TGAGGCAGCT GACTGAGCAC GTGAGTGCTG CCTTGTGGTT
GGTTGGTGGG TGGGTGGGTG GGTGGGAGCT GCCCAGCCAC CACAGTTCAG CAAAGTGCAG
GTTTGGCTTT CTCCATCTCC CAGCAGCCAT CTTGGCTAGC CAGAGAGCAA AGTCTAAAAC
M
CGCTGTGGGA TAGATGGTGC CTTCCCCGAG GTTGATTTTC ACAACACTTG GGCTTTTCTT
CTTGAAGCCC TCGGGAGAGC AGATTATGAT GTTTCAATAA CACCCGTGAA GGTTGCCTTG
GGCAGGTTAC CTCCCACAAC CCTGCCAAGA CGCTCCCTGA ATGAGCAGCC AGAGTATATA
TACTGCTTCA GAATGCCGGC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395628348 MGP_WTSI_16_22894649 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260213855 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395628348 MGP_WTSI_16_22894649 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:22713326 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ahsg alpha-2-HS-glycoprotein within coordinates
Gm30505 predicted gene, 30505 190 bp upstream
Tssr4818 transcription start site region 4818 1752 bp downstream
Tssr4819 transcription start site region 4819 755 bp upstream
Tssr4820 transcription start site region 4820 1371 bp upstream
Tssr137558 transcription start site region 137558 1995 bp downstream
Tssr137559 transcription start site region 137559 1799 bp downstream
Tssr137560 transcription start site region 137560 1756 bp downstream
Tssr137561 transcription start site region 137561 1731 bp downstream
Tssr137562 transcription start site region 137562 1405 bp downstream
Tssr137563 transcription start site region 137563 335 bp downstream
Tssr137564 transcription start site region 137564 305 bp downstream
Tssr137565 transcription start site region 137565 168 bp downstream
Tssr137566 transcription start site region 137566 159 bp downstream
Tssr137567 transcription start site region 137567 201 bp upstream
Tssr137568 transcription start site region 137568 220 bp upstream
Tssr137569 transcription start site region 137569 251 bp upstream
Tssr137570 transcription start site region 137570 266 bp upstream
Tssr137571 transcription start site region 137571 600 bp upstream
Tssr137572 transcription start site region 137572 623 bp upstream
Tssr137573 transcription start site region 137573 717 bp upstream
Tssr137574 transcription start site region 137574 738 bp upstream
Tssr137575 transcription start site region 137575 744 bp upstream
Tssr137576 transcription start site region 137576 1424 bp upstream
Tssr137577 transcription start site region 137577 1846 bp upstream
Tssr137578 transcription start site region 137578 1917 bp upstream
Tssr140504 transcription start site region 140504 184 bp upstream
Tssr140505 transcription start site region 140505 135 bp upstream
Tssr140506 transcription start site region 140506 254 bp downstream
Tssr140507 transcription start site region 140507 637 bp downstream
Tssr140508 transcription start site region 140508 681 bp downstream
Tssr140509 transcription start site region 140509 700 bp downstream
Tssr140510 transcription start site region 140510 715 bp downstream
Tssr140511 transcription start site region 140511 758 bp downstream
Tssr140512 transcription start site region 140512 1981 bp downstream
Tssr140513 transcription start site region 140513 1992 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory