rs260220556 SNP Detail

Summary

• ID
  rs260220556
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85532981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTATTTA CTGTTTGGTT
  TCCACGGTGA CACGTAGGCG CCGTCAGCGC CTCCCGTCAG CGGCCCCCAC CCGGCGCCGT
  GACGTCTGCC CGCCGCTTCC GTTCTGCCCA TATTTGGAAA GGCGCCGCGG GCAGGGAGGG
  GTTGGGAGCC GGACTCCCGC GGCGCCCCGC CCCCTGCCCG GCTCCGCCCC CGCACCGACC
  S
  GAGGAGCCAT GGGCTGTGCA CCCCTCCTCC TACCCCGACC CTGCGGAGGC GGGCGGGGGC
  TCGGGTCGCC AGCATCACTG GGCTAGTGGA GGCTGCAGTC AAAGCTTAGG GCCTGGCTCC
  TCTGTTCCCG GTGGACGATC CGGGATCACG ATTTTCGCTT TCTGTGCCCG GAAATCCTGG
  AAACAATCCC GGTCTAACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386736572	MGP_WTSI_12_86827157	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260220556					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386736572	MGP_WTSI_12_86827157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85532981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4899	CpG island 4899	within coordinates
Cpgi4900	CpG island 4900	616 bp proximal
Gm56541	predicted gene, 56541	114 bp upstream
Gm60138	predicted gene, 60138	within coordinates
Rr369567	regulatory region 369567	681 bp upstream
Rr403417	regulatory region 403417	1565 bp upstream
Rr469911	regulatory region 469911	196 bp distal
Rr469912	regulatory region 469912	within coordinates
Rr469913	regulatory region 469913	226 bp proximal
Rr469914	regulatory region 469914	1096 bp proximal
Rr469915	regulatory region 469915	1402 bp proximal
Rr469916	regulatory region 469916	1604 bp proximal
Rr469917	regulatory region 469917	1716 bp proximal
Tssr3900	transcription start site region 3900	1634 bp downstream
Tssr114406	transcription start site region 114406	22 bp upstream
Tssr114407	transcription start site region 114407	64 bp upstream
Tssr117091	transcription start site region 117091	400 bp upstream
Tssr117092	transcription start site region 117092	268 bp upstream
Tssr117093	transcription start site region 117093	241 bp upstream
Tssr117094	transcription start site region 117094	213 bp upstream