rs260225079 SNP Detail

Summary

• ID
  rs260225079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97116436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAGCTC TTTATGCCCT
  TGACTTCACT GTCTGGATCA TCTCAGAGTT TCCACCTGTA GAGCGTGTAT CCTCTGAGAA
  TTGATCACAC TGTCTTCATC CTTTGAATAT CAGGTACTTT TAAATTGAAT TTTAGGCATT
  TTGGGCATCA CATTATAAGT CTTTTGGTCT TCTTATCTAC CATGGGGAAT GTTGATTTAT
  R
  TTATTAGCAG GTAATCAGCC TCATTAGGTT CAAAGTTTTC CCTTGACATT TGCAGATGGT
  GGTTGCAATG GAAGCCTAGC TTCTGAAGCC TTCACATTGC CCCGTGGGTC AGTTTCTTGT
  GGGTAGCACT CCAAGACAGG ACAACGGATG ACATTTTAAC CTGGATCCCT CAGTCTTCAT
  GCAGCTGTGC TGTACATGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323117128	CHEV_9_97134802	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260225079					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97116436 () rs orientation: forward

Symbol	Name	Function Class
Gm29240	predicted gene 29240	283 bp upstream
Rr383804	regulatory region 383804	1233 bp upstream
Tssr2982	transcription start site region 2982	210 bp upstream