rs260226342 SNP Detail

Summary

• ID
  rs260226342
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10158963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGCAAAC GGCGCTCTAA
  AGAAGCTCAT GCTTCCAGAA ATAGAGATTG CTAGATTCAC CAGTCTACAC ACTGCTGGTG
  TAACCACTGC TGAGGCTGTC ACACAAACTT CACGATTGAT TGCGTCCTAC TGTCTCCTGA
  CAATTAAGGC CACTAAACCT GTATAATTCT AATTAATATA GTGAAACACA GTGGTGCTTG
  M
  CTATGATTAC AGCACTTGGG AGGCCAAAGC AGGGCGATCA TTGCAACTTC GAAGCTAATC
  TGTTCATCAC AGTGAGTTCC AGATCAGCCA GGGCTACTGC TTCCAGGGAC AAAAATAACA
  ACAAAACACA ATACGAAACT AAGATCACTA GAAATAGAAA ATGCTAAAGC TAATTGCAAA
  TGTTAAACTA CATACAAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401724129	MGP_WTSI_19_10256089	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260226342					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401724129	MGP_WTSI_19_10256089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10158963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	605 bp proximal
Fads1	fatty acid desaturase 1	1289 bp upstream
Gm59251	predicted gene, 59251	within coordinates
Rr356592	regulatory region 356592	1163 bp distal
Rr362958	regulatory region 362958	637 bp proximal
Rr363808	regulatory region 363808	1364 bp distal
Tssr155024	transcription start site region 155024	1269 bp upstream
Tssr155025	transcription start site region 155025	1286 bp upstream
Tssr155026	transcription start site region 155026	1307 bp upstream
Tssr155027	transcription start site region 155027	1322 bp upstream
Tssr155028	transcription start site region 155028	1395 bp upstream
Tssr155029	transcription start site region 155029	1408 bp upstream
Tssr155030	transcription start site region 155030	1438 bp upstream
Tssr155031	transcription start site region 155031	1548 bp upstream
Tssr155032	transcription start site region 155032	1923 bp upstream
Tssr158164	transcription start site region 158164	1857 bp downstream