rs260226650 SNP Detail

Summary

• ID
  rs260226650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96141153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTTAA ACTACTTAAA
  ATTCAGATGG CATTTAGAAA AGTGATAGCT TGGATTTAGG CATTTTATCA TTTTTTTTAC
  CTTTAAGCTT TTTTTTTTTT TTTTTTTTTT TAAATTTTAA ACAGCCTTTG TAATTTAGTA
  AGAAAGCCAG GTTCCATACA GCAAAGCTCC TTTCTTAGCA CCTGTGTTTT GAGGTTTTGG
  R
  ATGTGCCTTT CTTTCTTGGG CAGCAGCACA CATCTTGACC GCTTTTCTTG AGCATCTTTT
  AGTTTTATTG AGTATTTTAA GTTGAGCTTG TCTGAGCTCG ATTGCTTACG TCTGACACAG
  TCTCAAGTTT CCAGTGAATG GTAACAAAGA CTGTAGAGTG TTGTTGGTAC TGCAGTGAGA
  GGCATGCTTC CTTAGACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378570981	MGP_WTSI_9_96159519	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260226650					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378570981	MGP_WTSI_9_96159519	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96141153 () rs orientation: forward

Symbol	Name	Function Class
Rr684927	regulatory region 684927	348 bp distal
Rr684928	regulatory region 684928	184 bp distal
Rr684929	regulatory region 684929	within coordinates
Rr684930	regulatory region 684930	196 bp proximal
Rr684931	regulatory region 684931	685 bp proximal
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	120 bp upstream
Tssr86589	transcription start site region 86589	389 bp downstream
Tssr86590	transcription start site region 86590	374 bp downstream
Tssr86591	transcription start site region 86591	315 bp downstream
Tssr86592	transcription start site region 86592	298 bp downstream
Tssr86593	transcription start site region 86593	270 bp downstream
Tssr86594	transcription start site region 86594	87 bp downstream
Tssr86595	transcription start site region 86595	146 bp upstream
Tssr86596	transcription start site region 86596	170 bp upstream