rs260227339 SNP Detail

Summary

• ID
  rs260227339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190703234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACTGGC CCGAATGGAG
  CCCAACGTGC TTCACTGATT CTTAACTTTT TATCTCATGA TCCATTCTGC AGCGTGGCTA
  ATAGTGACCC TTTTATCTGT GTTCCCCTCT TGAACATTGT TGACACAGAA CATAAGGCAA
  GTGGCAGAAT GGCACAGCAG CCATGGGTAT CGTTTCTAAG TCACACCAGA AGAGGGCATC
  R
  GATCCCACTA GAGATGGTTG TGGAGAACCA TGTGGTTGCT GGGAATGGAA CTCAGGACCT
  CTGGAAGAGC AGTCAGTGCT CTTAACCAGC TGAGCCATCT CACAGCCCGG GGAATCATTT
  TTCAATACCA CACTCCTCGC ATGCCCACTG CTTTCTTTCC TTAGTCCCTT TCCTGAGTTC
  AAGATTAAGC AAGGCCCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320194427	CHEV_1_192794916	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260227339					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190703234 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr426014	regulatory region 426014			within coordinates
Rr426015	regulatory region 426015			607 bp proximal
Rr426016	regulatory region 426016			1501 bp proximal
Vash2	vasohibin 2			Intron
				Noncoding-Transcript-Variant