rs260230540 SNP Detail

Summary

• ID
  rs260230540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145881856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAGCAGGA TGAGGGCTGT GGGCAGGGTG TCACTGTCTC
  TCAGACACAG GGACCCTGTC CTTGTCTGAC CACAGTGTGG TTGGTCTCCA GACACCCTTC
  Y
  AGGCTGTCAG GGAGGGAGAG ACAGATGGTG AAGGCAGGTG TGTAAACACC GCACCTGGTG
  CTCAGTCCTG GCTTAGATGT TATTTGCTGA ATAACTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322075178	CHEV_6_145884650	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260230540					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145881856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	1689 bp distal
D6Mit200	DNA segment, Chr 6, Massachusetts Institute of Technology 200	686 bp distal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	1994 bp downstream
Tssr59565	transcription start site region 59565	1969 bp downstream