rs260232757 SNP Detail

Summary

• ID
  rs260232757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATGGG GGACTTGCCT
  TCTACCCCTG CCCTTTCTCT CTCCCTCACT TCTCATCCAG ATATTGCCAC CTTCCTCTCT
  TGCCTGTCTT ATGCCTTAGA CCTTTTTTCT TGCCTCTTTT ACCTTTTCCT CTTTCCAGTC
  TTCCTTGTGC ATCCCCAGAT CCCCAGCTTC ACCAGTTCAA TCATCCCAGG TGCACAGCAT
  Y
  GCGGACATGC TCGCACGTAC TTCATTCCCA GATCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC ACACACACAC ACACACACAC ACACACACAT ACACACACAC ACACCTCAGG
  CCCGCCATCC CAACAATACA TCACATCTCC ATGCTGCAGA CCTGAGGCCT GGGAGGTGTT
  GCCCATGGAT CCTGGGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384336289	MGP_WTSI_11_94814624	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260232757					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384336289	MGP_WTSI_11_94814624	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844136 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	268 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	8 bp proximal
Gm74287	predicted gene, 74287	941 bp downstream
Rr454892	regulatory region 454892	744 bp distal
Rr454893	regulatory region 454893	1870 bp proximal
Tssr3647	transcription start site region 3647	1326 bp downstream
Tssr104282	transcription start site region 104282	1986 bp downstream
Tssr104283	transcription start site region 104283	1833 bp downstream
Tssr104284	transcription start site region 104284	1773 bp downstream
Tssr104285	transcription start site region 104285	1743 bp downstream
Tssr104286	transcription start site region 104286	1710 bp downstream
Tssr104287	transcription start site region 104287	1686 bp downstream
Tssr104288	transcription start site region 104288	1646 bp downstream
Tssr104289	transcription start site region 104289	1638 bp downstream
Tssr104290	transcription start site region 104290	1590 bp downstream
Tssr104291	transcription start site region 104291	1575 bp downstream
Tssr104292	transcription start site region 104292	1478 bp downstream
Tssr104293	transcription start site region 104293	1371 bp downstream
Tssr104294	transcription start site region 104294	1337 bp downstream
Tssr104295	transcription start site region 104295	1293 bp downstream
Tssr104296	transcription start site region 104296	1269 bp downstream
Tssr104297	transcription start site region 104297	1246 bp downstream
Tssr104298	transcription start site region 104298	1212 bp downstream
Tssr104299	transcription start site region 104299	1178 bp downstream
Tssr104300	transcription start site region 104300	1158 bp downstream
Tssr104301	transcription start site region 104301	1038 bp downstream
Tssr104302	transcription start site region 104302	1024 bp downstream
Tssr104303	transcription start site region 104303	1005 bp downstream
Tssr104304	transcription start site region 104304	963 bp downstream
Tssr104305	transcription start site region 104305	941 bp downstream
Tssr104306	transcription start site region 104306	926 bp downstream
Tssr104307	transcription start site region 104307	909 bp downstream
Tssr104308	transcription start site region 104308	836 bp downstream
Tssr104309	transcription start site region 104309	812 bp downstream
Tssr104310	transcription start site region 104310	726 bp downstream
Tssr104311	transcription start site region 104311	677 bp downstream
Tssr104312	transcription start site region 104312	608 bp downstream
Tssr104313	transcription start site region 104313	592 bp downstream
Tssr104314	transcription start site region 104314	187 bp downstream
Tssr110224	transcription start site region 110224	1989 bp upstream
Tssr110225	transcription start site region 110225	1773 bp upstream
Tssr110226	transcription start site region 110226	1733 bp upstream
Tssr110227	transcription start site region 110227	1720 bp upstream
Tssr110228	transcription start site region 110228	1660 bp upstream
Tssr110229	transcription start site region 110229	1640 bp upstream
Tssr110230	transcription start site region 110230	1603 bp upstream