rs260235322 SNP Detail

Summary

• ID
  rs260235322
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17101983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTTTCAT CACCTGTGGG AGGAACAGGT
  TCCAATAATG AGTCATCTCC ATCAAACATT GACTGGGAAA TAGAAACAGA TAATTCAGAT
  TCACCAGCAG GTGGCGACAT GAAACCACCA AACGGTAAGC AACCCATTAC ACTCCAGCAA
  C
  acacacacac acacacacac acacacacac acacacacac acacacacac acacacacac
  CCCTCTTCCA CCATCAAGGA ACCAGTGTTA ATTAATTTAG TACATTTGTT AAAGCATTGC
  TACCAATGCA GACAGAGAAA GTAACCATAT                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325726631	CHEV_19_17199109	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260235322					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17101983 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Tssr155419	transcription start site region 155419	999 bp upstream
Tssr158489	transcription start site region 158489	809 bp downstream
Tssr158490	transcription start site region 158490	902 bp downstream
Tssr158491	transcription start site region 158491	965 bp downstream