rs260246006 SNP Detail

Summary

• ID
  rs260246006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57172655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA GCTCATTTAG AAGAATGCCA
  Y
  GAGGATTAAA TAAGATCACA CACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325201082	CHEV_16_57352405	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260246006					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57172655 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	721 bp upstream
Rr517288	regulatory region 517288	352 bp proximal
Rr517289	regulatory region 517289	1746 bp proximal
Tssr138825	transcription start site region 138825	479 bp upstream
Tssr138826	transcription start site region 138826	521 bp upstream
Tssr138827	transcription start site region 138827	690 bp upstream
Tssr138828	transcription start site region 138828	714 bp upstream
Tssr138829	transcription start site region 138829	810 bp upstream
Tssr138830	transcription start site region 138830	946 bp upstream
Tssr138831	transcription start site region 138831	979 bp upstream
Tssr138832	transcription start site region 138832	1004 bp upstream
Tssr141600	transcription start site region 141600	1714 bp upstream
Tssr141601	transcription start site region 141601	840 bp downstream
Tssr141602	transcription start site region 141602	888 bp downstream