rs260250280 SNP Detail

Summary

• ID
  rs260250280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20413555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCTCTA TTACTCTAAT
  CCACTGTAAA AGTGCACTCA GAACTGAGCA TCCTTAACAG TTATTCTATT TTTCTCCAGT
  AAGAGAAATG CCAAGATTTC AGGCTGTGGA CTGTGTTCCA GTGGCAAGCA GCAGAGATCC
  ATGTTTAGCT TGTGTGGGTA TTTTTTTTTA TTAAAAATGT TTGTAAATTT GTTTTGTGTA
  Y
  ATGGGTGGTT TGTACAGAGA CAATGGTAGA GAAAGACTAA ATAGGGGGAG TTTACGCAGC
  AGAGACATAA ACAAGTGAAA TTTGTGAATT TTACTTTCAG GTTTCCTTGT GATTCAAGGG
  CCCATGGCAT GTCTCTGGAT AAGCAGATTG CCATGGATCG AGGTACTCGG CCCTGAGTGG
  AGAGAGTGAG GGAATGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325739978	CHEV_19_20510681	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260250280					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20413555 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	102 bp distal
Gm32689	predicted gene, 32689	936 bp upstream
Gm41816	predicted gene, 41816	1563 bp upstream
Rr356916	regulatory region 356916	1155 bp distal
Rr356917	regulatory region 356917	846 bp proximal
Rr361508	regulatory region 361508	859 bp proximal
Rr364130	regulatory region 364130	1285 bp distal