rs260251074 SNP Detail

Summary

• ID
  rs260251074
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:49677375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAAATGT TAAATTTGTC
  TTAGGATGGA TGCTAAATTA ATTGAACCTT AAACTGATGG TTAACCTCAC AATGCCTTAT
  AAAGGCCAGT GTTTGGGATC TATTTCCAAG ATGCCCTTAA TACCCTGCCC ACCACTTCCC
  TCTCCCAATC ATCCTGGGTG TTGTAGCTGA TAATAATAAA GACCTGTGTT ATCTAAATTG
  W
  TGGTATTGGA TGTTTTCTGA TTTTAGTCGT TTTTACTGTG CTTGTTACCA TCGTTATCAT
  TATAACACTG TTTTCAAATA CCTGTTGTAT AATCAGAGAG CTTTCATATT GAGCCAGATA
  CAAATCTGTT ATAAAATGCT ACTGATTCAG ACCATGGACA GTGAATCTTG TTTGTCTGAA
  GAGTGAAAAG TCTAAGCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396238763	MGP_WTSI_16_49857125	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260251074					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396238763	MGP_WTSI_16_49857125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49677375 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)			Intron
				Noncoding-Transcript-Variant
Cpgi8307	CpG island 8307			790 bp distal
Gm4633	predicted gene 4633			1966 bp upstream
Gm56621	predicted gene, 56621			1713 bp downstream
Gm60685	predicted gene, 60685			4 bp downstream
Rr370104	regulatory region 370104			859 bp downstream
Rr516742	regulatory region 516742			1636 bp distal
Rr516743	regulatory region 516743			1522 bp distal
Rr516744	regulatory region 516744			765 bp distal
Rr516745	regulatory region 516745			830 bp distal
Tssr4899	transcription start site region 4899			1896 bp downstream
Tssr4900	transcription start site region 4900			1746 bp downstream
Tssr4901	transcription start site region 4901			1625 bp downstream
Tssr4902	transcription start site region 4902			1515 bp downstream
Tssr4903	transcription start site region 4903			1206 bp downstream
Tssr138726	transcription start site region 138726			1912 bp downstream
Tssr138727	transcription start site region 138727			1882 bp downstream
Tssr138728	transcription start site region 138728			1652 bp downstream
Tssr138729	transcription start site region 138729			1290 bp downstream
Tssr138730	transcription start site region 138730			1256 bp downstream
Tssr138731	transcription start site region 138731			900 bp downstream
Tssr138732	transcription start site region 138732			762 bp downstream
Tssr138733	transcription start site region 138733			681 bp downstream
Tssr138734	transcription start site region 138734			443 bp downstream
Tssr138735	transcription start site region 138735			393 bp downstream
Tssr138736	transcription start site region 138736			868 bp upstream
Tssr141348	transcription start site region 141348			1700 bp upstream
Tssr141349	transcription start site region 141349			1440 bp upstream
Tssr141350	transcription start site region 141350			1169 bp upstream
Tssr141351	transcription start site region 141351			884 bp upstream
Tssr141352	transcription start site region 141352			632 bp upstream