rs260252648 SNP Detail

Summary

• ID
  rs260252648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31853844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACAAGA CCTGAGGAGT
  GTGTGTGAGC GTGTCTGTAC AGGGGCAGGG ATAAGTACAG AGCAAGGAGA AGCCAGAGTC
  AGCAGGGTGC AGGTGCCTGG TGGAAGCTGA CGTCCTTGGG ACTGTCTGAG CACCGCTGGG
  AGGATACTCC AGGCTGAGAG ACCAGCCAGG TGGGGTGGAG GGGAACAGGG TGCCTGTAGC
  R
  GTGAATTAAT TATTAGTTAA ACCGCTTTGG CATGCTGCAC TTGCCCGAGA GCTCTCTGGA
  TTCACAAATG AAAGACATAC ACACACCACC TAATTTTGAT ATGCCTTGAC TAGCTCAATG
  GTTGGGCATT TCTAAACCTC CCGGAGGCTA GCACACACCC CCTCCAGTAT TCCTGGCATA
  ACACCTTCTA AATCTATGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353548765	MGP_WTSI_2_31819352	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260252648					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353548765	MGP_WTSI_2_31819352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31853844 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aif1l	allograft inflammatory factor 1-like			Intron
				Noncoding-Transcript-Variant
Gm13442	predicted gene 13442			within coordinates
Rr554763	regulatory region 554763			1296 bp distal
Rr554764	regulatory region 554764			795 bp distal
Rr554765	regulatory region 554765			within coordinates
Rr554766	regulatory region 554766			1337 bp proximal
Rr554767	regulatory region 554767			1457 bp proximal
Tssr459	transcription start site region 459			1850 bp upstream
Tssr17223	transcription start site region 17223			1808 bp downstream
Tssr17224	transcription start site region 17224			1760 bp downstream
Tssr17225	transcription start site region 17225			1635 bp downstream
Tssr17226	transcription start site region 17226			1590 bp downstream