rs260252883 SNP Detail

Summary

• ID
  rs260252883
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96512338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGCTCT GGTGTAATTT
  CCCAAGTTTT AATACTTAAA AGTGTCTGAA TTGGGAGTCC CAGGATGACG TCAGGGAATT
  GAAAAGTAAC ATTTAACATG CTTGCTCCTG GGGTTTTAAT AAAATTCCAA ATCCTTGAAA
  GGGGAGTAAC ATCAAAAACT CAAGTGGGAG AATCCAAAAG AAGCATCGAG ATTTAAGAAT
  K
  AAAGTTTATA CTCTGCCAAA GAAAGAGCAG TATCAGCCAT TCTAACACAA TTGAATTTTC
  AACATATAAA ATATCTCTTA TAGCCAGGCA TTATTTAGGA GACCGATTTC ATTCTGGGGA
  TAAAATAATC TGAATTAAAA AAGGTTTTCA ACTAAAGTAA CAATAAACTC TACTGATTCG
  CCAGTCATAC AGTGAAAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111048	CHEV_9_96530704	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260252883					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96512338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	158 bp proximal
Rasa2	RAS p21 protein activator 2	within coordinates
Tssr86611	transcription start site region 86611	708 bp upstream
Tssr90973	transcription start site region 90973	340 bp downstream
Tssr90974	transcription start site region 90974	586 bp downstream
Tssr90975	transcription start site region 90975	897 bp downstream
Tssr90976	transcription start site region 90976	1202 bp downstream