rs260253157 SNP Detail

Summary

• ID
  rs260253157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27837750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGCCCTC TGAAAAATAT
  CAAAGACGAC TAGCCAGGCG CCCATCCATT CAGTCAATAA ACCTGTCATA ACTCCACAAG
  AGCCTGTATC TGTGCTGGCC ATGTGGAGGA CAAAGCAGGA GCCAACGGTG ACTTGTCTGC
  CATGTAGTAG ACAACTCAGC GAAATGCTGA AGAGGCATAC AGGCCAGTGA GGGGTGAAAC
  Y
  GATGTCAGGC CAGAGCTGAA GACTAGGGAT TCAGAGGGGC AATGAGTCCA GAGGGAGACA
  AAGACACTGC TTGGACTCTC CTGCATCACT ACTATGTCCC AGTGTCCTGT AAGCCTTCCT
  CTCCACATGT CCCAAACTCC AACGGAGAAG CCAATGAGTC TATCGCCCCT CCTGTCCATT
  TCGTAGGCCC TGTGCTCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370854190	MGP_WTSI_7_28923344	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260253157					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370854190	MGP_WTSI_7_28923344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27837750 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	405 bp distal
Rr644171	regulatory region 644171	492 bp distal
Tssr2159	transcription start site region 2159	1817 bp upstream
Tssr65386	transcription start site region 65386	1214 bp downstream
Tssr65387	transcription start site region 65387	881 bp downstream
Tssr65388	transcription start site region 65388	783 bp downstream
Tssr65389	transcription start site region 65389	729 bp downstream
Tssr65390	transcription start site region 65390	1397 bp upstream
Tssr65391	transcription start site region 65391	1428 bp upstream
Tssr65392	transcription start site region 65392	1450 bp upstream
Tssr65393	transcription start site region 65393	1588 bp upstream
Tssr65394	transcription start site region 65394	1637 bp upstream
Tssr65395	transcription start site region 65395	1752 bp upstream
Tssr65396	transcription start site region 65396	1839 bp upstream
Tssr65397	transcription start site region 65397	1844 bp upstream
Tssr65398	transcription start site region 65398	1858 bp upstream
Tssr65399	transcription start site region 65399	1870 bp upstream
Tssr71448	transcription start site region 71448	1218 bp upstream
Tssr71449	transcription start site region 71449	1205 bp upstream
Tssr71450	transcription start site region 71450	1193 bp upstream
Tssr71451	transcription start site region 71451	786 bp upstream
Tssr71452	transcription start site region 71452	1441 bp downstream
Tssr71453	transcription start site region 71453	1464 bp downstream
Tssr71454	transcription start site region 71454	1491 bp downstream
Tssr71455	transcription start site region 71455	1802 bp downstream
Tssr71456	transcription start site region 71456	1856 bp downstream