rs260260079 SNP Detail

Summary

• ID
  rs260260079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43627778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGTGAAG AATGGAAACT
  TTTACATTTG ATAAGAGTGT AAATTAGTAA ATTAGACTGC TTTGGAAACC AGTCTGTAGG
  TTTCTCAAAG AACTAAAACT ATAGCTACCG TCTGTCCCGG CTATGGCACA GTTGGACACA
  TACATAAAGG ATGTGACGTC ATAGTATTGC ACACTTTGCA GATCCATGAT CATCGCCGCT
  Y
  CTGGCTGCTC TAGTCACCGT AGCTAGGGAG TGGATGAAGG GTAGGTGTCT ATCAACGGAA
  GAATCAAGAA TGCAAATGCT TTACAGATGT TTTTGTTTTC AACAGACAGA AATAAAGTGG
  AATCTAGATA AGAGGAAAGT AGATAGGGGT GGGGGTGGAG GGTGAGGGTG GGGGTGGGGG
  TGGGGGTGGA AGGTGAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269114	CHEV_2_43593286	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260260079					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43627778 () rs orientation: forward

Symbol	Name	Function Class
Rr373109	regulatory region 373109	1742 bp downstream
Rr556296	regulatory region 556296	within coordinates
Rr556297	regulatory region 556297	615 bp proximal
Tssr17595	transcription start site region 17595	1758 bp upstream
Tssr23873	transcription start site region 23873	909 bp downstream
Tssr23874	transcription start site region 23874	1250 bp downstream